PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g05260
Common NameGSCOC_T00043067001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HSF
Protein Properties Length: 461aa    MW: 51395 Da    PI: 5.0028
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g05260genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind75.21.1e-2353111260
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 
                   Fl+k++++++d++l+++isw ++g+sfvv+d+ efa+++Lp+ Fkh+nf+SFvRQLn+Y
   Cc06_g05260  53 FLSKTFDLVDDPALDSIISWGASGQSFVVWDPVEFARRILPRNFKHNNFSSFVRQLNTY 111
                   9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.6E-4849159IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.11E-3149159IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.8E-3450159IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.2E-2853159IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-135376IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-1391103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-13104116IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.1050.400.001200257IPR024080Neurolysin/Thimet oligopeptidase, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MVSPFVDLES RQHLQEIVPG ILSGGTITTE AARSFPGMPQ PMECLQGTPV PPFLSKTFDL  60
VDDPALDSII SWGASGQSFV VWDPVEFARR ILPRNFKHNN FSSFVRQLNT YVSVRLYGLL  120
LACVAILYGF RKIDADKWEF ASESFLRGKR HLLKNIQRRK SPHSHQLGGS SGSTGEAGKI  180
VLEGEVEKLR KERSLMMQEV FELQEQQLGT IQHVEAVNEK LQAAERRQKL MVSFMAKLFQ  240
NPDILDRLKQ IKEQKQITSS RTMRKFLKHQ PHEPGKAESF LEGQIVKYRT NFRDLATPSA  300
APEFDPGAVE QLPEFTLQEP SGGGFSSQGT EDTLLKGKTV VPPEVIPEYF VTSPDDLAKE  360
KNFPEYSSPD IESMLKEQEP WSMDFEAGAG VSSSSNEIWG NAVNYEIPEL MVSSGLPDIW  420
NLGSLPAAGS SGAEKWPDDE SPFSKLDDQV GQHKDESSNF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-225015917120Heat shock factor protein 1
5d5u_B3e-22201596129Heat shock factor protein 1
5d5v_B3e-22201596129Heat shock factor protein 1
5d5v_D3e-22201596129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066038.10.0heat stress transcription factor A-3-like
TrEMBLA0A068V4C10.0A0A068V4C1_COFCA; Uncharacterized protein
STRINGXP_009765951.11e-161(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87272025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-100heat shock transcription factor A3