PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc06_g04520

Common Name

GSCOC_T00042964001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 305aa MW: 32797.7 Da PI: 7.8612

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc06_g04520	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	125	147	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H Cc06_g04520 125 YQCKTCNRSFPSFQALGGHRASH 147 9***********99999998887 PP
2	zf-C2H2	13.7	0.00018	206	228	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Cc06_g04520 206 HECSICGAEFSSGQALGGHMRRH 228 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	8.3E-13	124	149	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.65E-9	124	147	No hit	No description
PROSITE profile	PS50157	11.863	125	152	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.03	125	147	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	127	147	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.65E-9	201	228	No hit	No description
Pfam	PF13912	5.7E-13	205	229	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.743	206	228	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	206	228	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	208	228	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MEVHQEEIIL GSKHMIFKGK RTKRQRTVSQ PPFLLTMATT TSSSCSTGTP GGDSFTAFNR 60 VTASPSNSGE LTQTSVAGVD QEEDMANCLI LLAQGRARKS TQPTTHLPMP STSTAKSSSA 120 VHDVYQCKTC NRSFPSFQAL GGHRASHKKP KPTDLEDKSP PPLSLGGHQE STVGLIRDED 180 TTLSLQIPSG RKDPIISGDV NKSRVHECSI CGAEFSSGQA LGGHMRRHRP LPTLTGTSSN 240 DDEGSREFAA KKPRALLSLD LNLPAPPDQP EDDYSTESKY PFASAKQQVI VFSASPHPLV 300 DCHY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027070587.1	0.0	zinc finger protein ZAT5-like
TrEMBL	A0A068V3D7	0.0	A0A068V3D7_COFCA; Uncharacterized protein
STRING	XP_006493540.1	5e-77	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	5e-55	C2H2 family protein