PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g04470
Common NameGSCOC_T00042956001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 118aa    MW: 13950 Da    PI: 10.7126
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g04470genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-16855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEde+l+ av  lG ++W + a+  g++R++ +c++rw +yl
      Cc06_g04470  8 KGPWLEEEDERLIAAVSILGERRWGSLAKASGLRRSGRSCRLRWMNYL 55
                     79********************************************97 PP
2Myb_DNA-binding57.23.8e-1864106448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       T+eE+ l+++++kq+G++ W++Iar ++ gRt++++k++w+++l
      Cc06_g04470  64 ITEEEEHLIIQLHKQWGNR-WSRIARSLP-GRTDNEIKNYWRTHL 106
                      69*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.395155IPR017930Myb domain
SuperFamilySSF466895.35E-296102IPR009057Homeodomain-like
SMARTSM007171.9E-13757IPR001005SANT/Myb domain
PfamPF002493.6E-14855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-21962IPR009057Homeodomain-like
CDDcd001672.33E-81055No hitNo description
PROSITE profilePS5129427.18356110IPR017930Myb domain
SMARTSM007171.7E-1560108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2563109IPR009057Homeodomain-like
PfamPF002493.8E-1664106IPR001005SANT/Myb domain
CDDcd001677.79E-1165106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MQEAEMRKGP WLEEEDERLI AAVSILGERR WGSLAKASGL RRSGRSCRLR WMNYLRPNLK  60
HGHITEEEEH LIIQLHKQWG NRWSRIARSL PGRTDNEIKN YWRTHLRKKA LILEEGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-30411023128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027069326.11e-78myb-related protein MYBAS1-like
SwissprotQ9SCP19e-53MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A068V3D21e-77A0A068V3D2_COFCA; Uncharacterized protein
STRINGSolyc09g008390.1.13e-63(Solanum lycopersicum)
STRINGXP_009625011.15e-63(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.13e-44myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]