PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g03470
Common NameGSCOC_T00023631001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 472aa    MW: 51777.4 Da    PI: 8.9682
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g03470genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.31.3e-32194250360
                  -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geH h+k
  Cc06_g03470 194 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHSHPK 250
                  9***************************************.***************85 PP
2WRKY102.72.1e-32389446259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg++WrKYGqK+vkg+++prsYYrCts +C+v+k ver+++dp+++ +tYeg+Hnhe
  Cc06_g03470 389 RDGFRWRKYGQKVVKGNPYPRSYYRCTSLKCNVRKYVERTSDDPNAFMTTYEGKHNHE 446
                  7********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-29179250IPR003657WRKY domain
SuperFamilySSF1182903.14E-25190250IPR003657WRKY domain
SMARTSM007749.9E-37192250IPR003657WRKY domain
PROSITE profilePS5081122.355194251IPR003657WRKY domain
PfamPF031061.9E-25194249IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-32374448IPR003657WRKY domain
PROSITE profilePS5081133.545383448IPR003657WRKY domain
SuperFamilySSF1182903.79E-28384448IPR003657WRKY domain
SMARTSM007742.1E-37388447IPR003657WRKY domain
PfamPF031064.0E-25390446IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MEIKETEKVA IAKPVASRPT CSSFKSFSEL LAGAINASPS STCSEAAVTA IRPRTVRFKP  60
AMDHPSAGVA ASQANLCGAA VSSPTAKDLK ADGKCNVVYK PMAKLVSKTT VSLLANMRSA  120
NLFQEQELAE VEANFQLPNL VKPQCDNRSE LHQNFLSAAQ KNKRVEPSNV TTQNLEEDQR  180
SLAHTANGDR PSYDGYNWRK YGQKQVKGSE YPRSYYKCTH PNCPVKKKVE RSLDGQIAEI  240
VYKGEHSHPK TQPVRRNSSD GHWQGTSGNE SNNPLCRNQH SDKNECYEGT MENPNEFGFL  300
AHSSYSGGAP SCMHPTNGAS NFGVSNLDNS SCHSGEFDEG REGLEGETDG PKRKRRKNDN  360
QSNVAGTAAE GAQEPQVLGQ NSTDSEIIRD GFRWRKYGQK VVKGNPYPRS YYRCTSLKCN  420
VRKYVERTSD DPNAFMTTYE GKHNHEMPTK STSSLAAKTS TKALGTQKNI S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-29194448977Probable WRKY transcription factor 4
2lex_A3e-29194448977Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350357PKRKRRKN
2351356KRKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027175292.10.0WRKY transcription factor 44 isoform X1
RefseqXP_027175293.10.0WRKY transcription factor 44 isoform X1
TrEMBLA0A068UE220.0A0A068UE22_COFCA; Uncharacterized protein
STRINGXP_002525200.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99512227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-108WRKY family protein