PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g01270
Common NameGSCOC_T00023341001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family G2-like
Protein Properties Length: 279aa    MW: 31137.4 Da    PI: 9.7417
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g01270genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like941.2e-293690155
      G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                 k+rl+Wt+eLH+ F +av+qLGG+++AtPk il++m+++gLt+ hvkSHLQkYR+
  Cc06_g01270 36 KERLKWTQELHSLFEKAVNQLGGPDRATPKGILKAMGIPGLTIFHVKSHLQKYRM 90
                 68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.2133393IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-273491IPR009057Homeodomain-like
SuperFamilySSF466898.96E-173590IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-233691IPR006447Myb domain, plants
PfamPF002492.4E-93889IPR001005SANT/Myb domain
PfamPF143791.5E-16123166IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MVNATRVPEG RVAAHFYARE TSEVNMGASR SDGSSKERLK WTQELHSLFE KAVNQLGGPD  60
RATPKGILKA MGIPGLTIFH VKSHLQKYRM SKFIPESPNR GNRFERRSIS EILPNFSATS  120
GAQLNEALQM QKEVQKRLSD QLEVQRSLKM KIEAQGRFLE RIANEHKNRA ANAKPSKPYS  180
PAVSLPSLCE ESDSEVDRNE IRPAVAAAAA EFRAPKRIRI EDDDALLQKC NLESYNTGHQ  240
SPFLLRGLNS PCWAHEMGYP WGVATQSPML PALYDPLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-213593159Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-213593159Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-213693158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-213693158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-213693158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-213693158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-213593159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-213593159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-213593159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-213593159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-213593159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-213593159Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027069043.10.0myb family transcription factor PHL7-like
SwissprotQ9SJW01e-52PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A068UDA60.0A0A068UDA6_COFCA; Uncharacterized protein
STRINGXP_006429402.18e-92(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101012026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.17e-55G2-like family protein