PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g01240
Common NameGSCOC_T00023337001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 284aa    MW: 32765.8 Da    PI: 8.4661
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g01240genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.89e-2633115186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W+ qe+++ + +r e++ ++ ++k++k lWe ++ kmre+g++rs++qCk+kw+nl +ryk ++++e ++   +++++p++++l+
  Cc06_g01240  33 QWSMQETRDFLMIRAELDPTFMETKRNKLLWEVIATKMREKGYNRSAEQCKCKWKNLVTRYKGCETMEPEG---VRQQFPFYNDLQ 115
                  7********************************************************************96...77889****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00883092IPR001005SANT/Myb domain
CDDcd122031.63E-243297No hitNo description
PfamPF138372.3E-2033116No hitNo description
PROSITE profilePS500907.4453490IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MESHQHHHHH QYGSSSGVHI DSGGGGGGDR FPQWSMQETR DFLMIRAELD PTFMETKRNK  60
LLWEVIATKM REKGYNRSAE QCKCKWKNLV TRYKGCETME PEGVRQQFPF YNDLQTIFAA  120
RMQRMLWMEA EGGAGSSKKK AAQLSSDDED DNDDSEVERA HKKKRKLKAG GGGGGGGASS  180
ASASAAAGGN AVNSLKEILD EFMKQQMQIE MQWMKAYEAR EEERRKRETE WRQTMEALEN  240
ERLMMDKRWR EREEQRRIRE EARAEKRDAL ITALLNKLQR EDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A8e-133494767DNA binding protein GT-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166KKKRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027070202.10.0trihelix transcription factor GT-3a-like
SwissprotQ9SDW01e-72TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A068UFR60.0A0A068UFR6_COFCA; Uncharacterized protein
STRINGXP_009799172.11e-118(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.13e-61Trihelix family protein