PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc06_g01040

Common Name

GSCOC_T00023310001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 162aa MW: 17684.2 Da PI: 9.6879

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc06_g01040	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.5	6.6e-10	42	84	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + r RR+ri ++f L++l+P K++ +++Le+A++Y+k L Cc06_g01040 42 VAARERRHRISERFKILQSLVPGG-----SKMDTVSMLEEAIHYVKFL 84 56799***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.389	35	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-14	39	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-12	39	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.43E-13	39	88	No hit	No description
SMART	SM00353	1.4E-12	41	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-7	43	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MEGSSLRDRR SCALASNGKD KKGGGKRPAG KAAKLSTDAQ SVAARERRHR ISERFKILQS 60 LVPGGSKMDT VSMLEEAIHY VKFLKTQIWL HQTMINFVDT DPSLPLPSAY HLPANQADDL 120 YSRLNMQGDQ TNALAALPQL GFAYSGPLCG ESISLDKTFL Y*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027066217.1	1e-118	transcription factor bHLH87
Swissprot	Q9M041	7e-29	BH140_ARATH; Transcription factor bHLH140
TrEMBL	A0A068UFP5	1e-116	A0A068UFP5_COFCA; Uncharacterized protein
STRING	VIT_08s0058g00110.t01	5e-42	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11714	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	1e-30	APRATAXIN-like

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]