PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc06_g00820 | ||||||||
Common Name | GSCOC_T00023282001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | BES1 | ||||||||
Protein Properties | Length: 185aa MW: 20617.4 Da PI: 9.5984 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 122.4 | 5.9e-38 | 37 | 110 | 3 | 76 |
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl 76 + r p+ +Er nnk+RER RR +a ki+aGLRa+Gny+lpk aD n+ lkALc+eAGw vedDGt+yrk s + Cc06_g00820 37 KYRYPSDRERLNNKQRERNRRGVAHKIFAGLRAHGNYQLPKNADSNDLLKALCEEAGWHVEDDGTVYRKTSMVE 110 6799****************************************************************987655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.7E-34 | 38 | 118 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MAEVTKNAGL TPRGCIKSSK GPWVVRRTTR NGGTVTKYRY PSDRERLNNK QRERNRRGVA 60 HKIFAGLRAH GNYQLPKNAD SNDLLKALCE EAGWHVEDDG TVYRKTSMVE EPSLIKMDSY 120 AVGMPHKLEA AGYCTCKEAI ASSFAGECRQ RNLVPFGIYE GIHTDLALSL SLPLAHDHQF 180 KDRV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 4e-14 | 59 | 105 | 392 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 4e-14 | 59 | 105 | 392 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 4e-14 | 59 | 105 | 392 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 4e-14 | 59 | 105 | 392 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009795965.1 | 3e-56 | PREDICTED: uncharacterized protein LOC104242587 | ||||
TrEMBL | A0A068UD63 | 1e-136 | A0A068UD63_COFCA; Uncharacterized protein | ||||
STRING | XP_009795965.1 | 1e-55 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6204 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36780.1 | 3e-18 | BES1/BZR1 homolog 2 |