PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g15790
Common NameGSCOC_T00038647001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 731aa    MW: 78761.8 Da    PI: 6.5148
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g15790genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.26.8e-33316373260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh+k
  Cc05_g15790 316 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSQ-EGHITEIIYKGAHNHPK 373
                  8****************************************.***************85 PP
2WRKY103.71e-32525583159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  Cc05_g15790 525 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 583
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-29312374IPR003657WRKY domain
SuperFamilySSF1182905.89E-26313374IPR003657WRKY domain
SMARTSM007749.0E-37315373IPR003657WRKY domain
PfamPF031062.3E-25316372IPR003657WRKY domain
PROSITE profilePS5081123.261316374IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.4E-37510585IPR003657WRKY domain
SuperFamilySSF1182901.7E-28517585IPR003657WRKY domain
PROSITE profilePS5081138.664520585IPR003657WRKY domain
SMARTSM007741.5E-37525584IPR003657WRKY domain
PfamPF031066.6E-25526583IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MGEFDDHVAI IGDWMPRSPS PRALFSTLLG DDVSLRTVAE PTSENKAGFS FPGPVEHSAS  60
ASSDQKDGSQ GGAAVDQTGK FSSMSEQRMS SRGGLMERMA ARAGFNAPRL NTESIRPPDL  120
SQSLEVRSPY LTIPPGLSPT SLLDSPVFLT NSLVQPSPTT GKLGFLMSGS SRNATVTEFP  180
DKSKENYFQN VNTSSFAFRP ILESAPPLFF GASNRITSTN LPQQPFPSIE VSVQSGNTLP  240
HRSVEHAKSA ALNQPADFSR PSAAKDTVHN DILSEPSSFQ NVGGGSEHSP PLDEQQEDDA  300
DQRGGGDQNI SGAPAEDGYN WRKYGQKQVK GSEYPRSYYK CTHPNCPVKK KVERSQEGHI  360
TEIIYKGAHN HPKPPPNRRS ALGSSNALSD LQVENSEQVA MGADGNPGWT TMQKGNFDWR  420
HDNLEETSSA ALGPEYGNGT TSLQAQNGSQ LESGDGVDGS STFSNDEDDE DRGTHGSVSL  480
GYDEGDESES KRRKIESYAS DMSGATRAIR EPRVVVQTTS EVDILDDGYR WRKYGQKVVK  540
GNPNPRSYYK CTSAGCTVRK HVERASHDLK SVITTYEGKH NHDVPAARNS SHVNSGISGT  600
LPAQAGAAVQ SHVHRPEPSQ LHNSMAQFER PPLGSFALPG RPPLGPTHSF GFGMNQQGLP  660
NMTLAGLGPP NQGKIPALPV HPYLGQPRPM NEMGHLLPKG EPKMEPMSDP GLNLSNGSSV  720
YHMSRLPLGR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36316586878Probable WRKY transcription factor 4
2lex_A2e-36316586878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027170840.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_027170841.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_027170842.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_027170844.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_027170845.10.0probable WRKY transcription factor 2 isoform X1
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A068UZA70.0A0A068UZA7_COFCA; Uncharacterized protein
STRINGVIT_19s0015g01870.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]