PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g15570
Common NameGSCOC_T00038673001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 324aa    MW: 35910.5 Da    PI: 7.3418
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g15570genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding612.5e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd +l  +++q+G+++W++I+++ g+ R++k+c++rw +yl
      Cc05_g15570 14 RGQWTPEEDHKLSSYIAQHGTRNWRLIPKHAGLQRCGKSCRLRWTNYL 61
                     89********************************************97 PP
2Myb_DNA-binding452.5e-1468110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++  E++ +v ++  lG++ W+ Ia+ ++ gRt++++k++w++
      Cc05_g15570  68 GQFSDAEEQTIVTLHSVLGNR-WSVIAAQLP-GRTDNDVKNHWNT 110
                      7899*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-26564IPR009057Homeodomain-like
PROSITE profilePS5129426.91965IPR017930Myb domain
SuperFamilySSF466894.87E-2911108IPR009057Homeodomain-like
SMARTSM007173.6E-131363IPR001005SANT/Myb domain
PfamPF002497.2E-181461IPR001005SANT/Myb domain
CDDcd001671.50E-111761No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2365116IPR009057Homeodomain-like
PROSITE profilePS5129419.54466116IPR017930Myb domain
SMARTSM007171.0E-1266114IPR001005SANT/Myb domain
PfamPF002491.3E-1268110IPR001005SANT/Myb domain
CDDcd001671.79E-970112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRIPCCEKD NVKRGQWTPE EDHKLSSYIA QHGTRNWRLI PKHAGLQRCG KSCRLRWTNY  60
LRPDLKHGQF SDAEEQTIVT LHSVLGNRWS VIAAQLPGRT DNDVKNHWNT KLKKKLSGMG  120
IDPVTHKPFS HLITEIATTL APPQVPHLAE AALGCFKDEM LHLLTKKRIG SYQMQQIGLT  180
PVNTAATHVK HEDRDETIEK IKYGISRAIK DPETSPTNKP WDPVVAGSAN FAGSCNAFAA  240
PDSGFHYGLS SLVNEGNGSA WNQSMCPGSS ATGDRQCQLD EKLEDENGQD WKGGKEMRDG  300
ATLFNSDCVL WDLPSEELMS PMV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00564DAPTransfer from AT5G56110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027061980.10.0transcription factor MYB80-like
RefseqXP_027063646.10.0transcription factor MYB80-like
RefseqXP_027170550.10.0transcription factor MYB80
SwissprotQ7XQN11e-123MYB80_ORYSJ; Transcription factor MYB80
TrEMBLA0A068UZI40.0A0A068UZI4_COFCA; Uncharacterized protein
STRINGXP_008219084.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-114myb domain protein 103