PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g14660
Common NameGSCOC_T00038793001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 546aa    MW: 59245 Da    PI: 6.348
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g14660genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.5e-31195252260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  +++++ei+Y+g+H+h+k
  Cc05_g14660 195 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-EGQITEIVYKGSHDHPK 252
                  8****************************************.***************85 PP
2WRKY107.47e-34367425159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+v+g+++prsYY+Ct+agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Cc05_g14660 367 LDDGYRWRKYGQKVVRGNPNPRSYYKCTHAGCPVRKHVERASHDPKAVITTYEGKHNHD 425
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-26184253IPR003657WRKY domain
PROSITE profilePS5081122.274189253IPR003657WRKY domain
SuperFamilySSF1182902.75E-24192253IPR003657WRKY domain
SMARTSM007743.4E-33194252IPR003657WRKY domain
PfamPF031068.2E-24195251IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.8E-38352427IPR003657WRKY domain
SuperFamilySSF1182908.63E-30359427IPR003657WRKY domain
PROSITE profilePS5081138.595362427IPR003657WRKY domain
SMARTSM007741.2E-39367426IPR003657WRKY domain
PfamPF031061.7E-26368425IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MSPAKLPISR SPCTLTIPPG LSPTSFLESP VLLSNIKAEP SPTTGTFSMP QMMQGSSGTS  60
GFSYLTNCSS LNAVNKTNSC NFEFQFHADS GDAAGLRPIG LAVSSGLVQQ HNKSLGQVPD  120
SGLSQSLVSS SLVKHEVVMA KESNFSAPTT ISDCATTAVD SDVLNQKNHP NISNQVSNSD  180
SKDTTSSVAN DRSSDDGYNW RKYGQKLVKG SEFPRSYYKC TYPNCEVKKI FERSPEGQIT  240
EIVYKGSHDH PKPQPSRRFT PGALLSIQEE KFDKDSTFTG QEDKLNVNSQ NTSVEPNSTP  300
VPSPQQENDD GLDGTLSKLQ CVNDEIDEDD PFSKRRKLDG SLDVTPVVKP IREPRVVVQT  360
VSEVDILDDG YRWRKYGQKV VRGNPNPRSY YKCTHAGCPV RKHVERASHD PKAVITTYEG  420
KHNHDVPTAR TSSHEMAGPA TMGAMSRIRS EEDDPISLDL GVGISYGAEH RPDAQLQMLN  480
SEPLQSQVPA AASTRMVVQA STLPACYGVV NGGITLYGSK ENLEAVVLGQ HLCGLQTNVH  540
KILEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36195427877Probable WRKY transcription factor 4
2lex_A1e-36195427877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063771.10.0probable WRKY transcription factor 20
SwissprotQ93WV01e-152WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A068UZ040.0A0A068UZ04_COFCA; Uncharacterized protein
STRINGXP_009591627.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-153WRKY family protein