PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g11490
Common NameGSCOC_T00021309001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 304aa    MW: 34075.7 Da    PI: 4.9966
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g11490genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.31.2e-11173220552
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                  kr +r   NR +A+rsR RK+++i eLe+ v +L++e +aL  ++  l
  Cc05_g11490 173 KRIKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL 220
                  899**********************************99998776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.5E-14169233IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.691171234IPR004827Basic-leucine zipper domain
PfamPF001703.9E-10173218IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.4E-14173224No hitNo description
SuperFamilySSF579591.04E-11173227No hitNo description
CDDcd147037.92E-23174224No hitNo description
PROSITE patternPS000360176191IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MTQNWYPSFP FQMMPLPPPP TTVQQNSWVD EFLDFSSARR SSHRRSVSDS VAFVEAPFVE  60
ECRNADNPTN ISVTCNGHNF DGLDDEQLRN MFSDDIATKE LPPLSSSDPA STNPSTPSDQ  120
NSENDEKNAA AQENPNLQPK NEPGEVDIST KRETETQTES PANPSADAIV DPKRIKRILA  180
NRQSAQRSRV RKLQYISELE RSVTTLQTEV SALSPRVAFL DHQRLVLNVD NSALKQRIAA  240
LAQDKIFKDA HQEALRKEIE RLRHIYHEQS MQMMSKKAAD EASPPPLPQP QPNLNKTCGT  300
DQE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027062374.10.0basic leucine zipper 61-like
SwissprotQ9M2K43e-84BZP61_ARATH; Basic leucine zipper 61
TrEMBLA0A068UBN60.0A0A068UBN6_COFCA; Uncharacterized protein
STRINGEOY131621e-112(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17752465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.11e-76bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]