PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc05_g08000

Common Name

GSCOC_T00016806001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bZIP

Protein Properties

Length: 308aa MW: 34515.7 Da PI: 6.4106

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc05_g08000	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.9	3.4e-11	179	223	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 kr +r NR +A+rsR RK+++i eLe+ v +L+ae + L ++ Cc05_g08000 179 KRIKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRV 223 899*********************************988776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.2E-13	175	239	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.599	177	229	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.93E-11	179	233	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.9E-12	179	230	No hit	No description
Pfam	PF00170	1.5E-9	179	223	IPR004827	Basic-leucine zipper domain
CDD	cd14703	3.18E-22	180	230	No hit	No description
PROSITE pattern	PS00036	0	182	197	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MAQLPPKAPN MAPNWPDFSH QKIHTLDNLG GANAATNHNP LWVDEFLDFS SAKRGFHRRS 60 ISDSIAFLEV PMVEECRRST IIPGSGAASE FEKFDDEQLM SMFTDDIPTS IDPKMSCSNP 120 SSPSDHNSIN EDKLNPSDLQ LQQLKSEPEE VQSSCKSDGQ LAANNETMDN SSDKIVDPKR 180 IKRILANRQS AQRSRVRKLQ YISELERSVT SLQAEVSVLS PRVAFLDHQR LVLNVDNSVL 240 KQRIAALAQD KIFKDAHQEA LKREIERLRQ VFYQQNLKKM ENATPPEPKR QPATAGNASA 300 EKEQLVN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027062630.1	0.0	basic leucine zipper 61-like
Swissprot	Q9M2K4	1e-111	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	A0A068V5U8	0.0	A0A068V5U8_COFCA; Uncharacterized protein
STRING	XP_009777081.1	1e-148	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1775	24	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	1e-114	bZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]