PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g05900
Common NameGSCOC_T00035177001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 257aa    MW: 29405.3 Da    PI: 4.7776
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g05900genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.31e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l  +v ++G  +W+  ++  g+ R++k+c++rw +yl
      Cc05_g05900 14 KGAWSEEEDNKLRAYVLRYGHWNWRQLPKFAGLSRCGKSCRLRWMNYL 61
                     79******************99************************97 PP
2Myb_DNA-binding59.29.3e-1967112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T eE++l++++++q+G++ W++Ia++++ gRt++++k++w+++l
      Cc05_g05900  67 RGKYTIEEEDLIIKLHEQYGNR-WSAIAAKLP-GRTDNDIKNHWHTHL 112
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.525961IPR017930Myb domain
SuperFamilySSF466891.72E-3011108IPR009057Homeodomain-like
SMARTSM007171.0E-111363IPR001005SANT/Myb domain
PfamPF002492.9E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-211568IPR009057Homeodomain-like
CDDcd001671.44E-81661No hitNo description
PROSITE profilePS5129425.90562116IPR017930Myb domain
SMARTSM007174.8E-1766114IPR001005SANT/Myb domain
PfamPF002494.1E-1767112IPR001005SANT/Myb domain
CDDcd001671.96E-1269112No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2669115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MVRAPSVDKN GVKKGAWSEE EDNKLRAYVL RYGHWNWRQL PKFAGLSRCG KSCRLRWMNY  60
LKPGVRRGKY TIEEEDLIIK LHEQYGNRWS AIAAKLPGRT DNDIKNHWHT HLKKRNKQTQ  120
LSERSQNMDD ADQNEQSSAM STSGSSTDQK REMDPNASAA DSLDAYTDIS SLSCDSTLFD  180
CVDWVADDSN SSVESLTEPF ESFWTEPFAL DTSFSNYISV DPWLPSTEEE FLYPFSSFLD  240
DGIDCFHELN NRKGDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24141157107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027170194.10.0transcription factor MYB13-like
TrEMBLA0A068UUA90.0A0A068UUA9_COFCA; Uncharacterized protein
STRINGcassava4.1_014242m4e-79(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.18e-57myb domain protein 15