PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g05320
Common NameGSCOC_T00035099001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 360aa    MW: 39803.9 Da    PI: 7.2667
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g05320genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.27.8e-052122521055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r R+ri ++   L+++lP++     kK++  ++Le+A +Y+k Lq
  Cc05_g05320 212 KRIRQRISEKTRCLQRVLPWD-----KKMDMGTMLEEAYKYVKFLQ 252
                  4558999999999*******9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.023202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.15E-5211256No hitNo description
SuperFamilySSF474597.2E-8212263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-7212260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MERKFPGGGQ LRGYSAGVNA PAMLGLEEAY LNGYFSDLSF QSILQPPCHY DNQSLQQPAV  60
ETPAFSQATC GYYIQDVPES STSTFSEPNP TTYQFLNREE LKTPKHEVLD TQDFAFQLLK  120
LNETTPSPAV SPTEPLINFF STCSSSMDDL SCNSSGGAGQ FVYQTGSLSD IMNVQVQQLT  180
ESSSSTSRFP THRVDPGKRY VPYNLSPKPD RKRIRQRISE KTRCLQRVLP WDKKMDMGTM  240
LEEAYKYVKF LQAQISVLQT MPEKSSTAAI SSSGGKSKNP SYDVSSSGVG ENNVAWGDLG  300
KLNRQQLLEV VVNSRVAQTA LYSRGCCVYS TEQLVLLKKM AEKKTLSEQV LFASPLLFS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027172052.10.0transcription factor HEC1
TrEMBLA0A068UUA30.0A0A068UUA3_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112501821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.13e-25bHLH family protein