PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g04050
Common NameGSCOC_T00031585001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 325aa    MW: 36709.8 Da    PI: 7.0979
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g04050genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.4e-12187212126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  y   +C+++ +tG+C yGd CkF+H+
  Cc05_g04050 187 YQPDICKDYKETGYCGYGDACKFMHD 212
                  67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.14E-9185217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577186214IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7186213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-12187217IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-10187212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.3E-13246305IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578504.62E-13251306No hitNo description
PfamPF139201.6E-8263305No hitNo description
PROSITE profilePS5008910.409264302IPR001841Zinc finger, RING-type
CDDcd001621.50E-8264305No hitNo description
SMARTSM001841.8E-4264301IPR001841Zinc finger, RING-type
PROSITE patternPS005180279288IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MADSGEAPQQ KQEVCNFFKK PSKGKNIRKR PAVDEDNADE DSKDESSVIF NKKKPAAADN  60
KLHFSTGSSK RSIEAETNAD SKTPFFHFES SKEIQVHNDS RATATLETET EFSRDARAIR  120
ERVLKQAEEA LQGKGTSDEK VYKGMHGYTD YKAGFRREHT VSGEKAGGSH GPLRASAHIR  180
VSARFDYQPD ICKDYKETGY CGYGDACKFM HDRGDYKSGW QLEKEWDEAE KIRKRNLALG  240
IDNADEDTAE KSDEDEDDAL PFACFICRQP FVDPVVTKCK HYFCEHCALK HHARNKKCFV  300
CNQPTMGIFN TAFEIRKRMS AEGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M6e-6813191317RING finger protein 113A
5z58_M6e-6813191317RING finger protein 113A
6ff4_t6e-6813191317RING finger protein 113A
6ff7_t6e-6813191317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027064993.10.0zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-165C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A068UR940.0A0A068UR94_COFCA; Uncharacterized protein
STRINGXP_009609000.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-167C3H family protein