PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc04_g16030 | ||||||||
Common Name | GSCOC_T00042393001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 275aa MW: 29890.8 Da PI: 6.9137 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.2 | 9.2e-11 | 160 | 207 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Cc04_g16030 160 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 207 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.19E-10 | 154 | 211 | No hit | No description |
SuperFamily | SSF47459 | 7.46E-18 | 154 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.828 | 156 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-18 | 156 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.9E-8 | 160 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-10 | 162 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MDPPIVSHSS FSPAHASSSY TLTDLWPFPI GPPAVLGLPM PPALPPPHAT PPPVAALSLE 60 ESTVTDLSAC RTNATNKRKH VLSQHHLLAS ASCAVHSNNA NVKRMKASEG GIGEQIDESK 120 AEPQTSSYTT NKPADHDDTN PQPPKDYIHV RARRGQATDS HSLAERARRE KISERMKILQ 180 DLVPGCNKVI GKALVLDEII NYIQSLQRQV EFLSMKLEAV NSRMNSAIEG FPSKELAAPQ 240 LDATAMIFGQ QAPREYAPDE WLHIQVGSSF ERAT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027121342.1 | 0.0 | transcription factor bHLH79-like | ||||
Swissprot | Q9LV17 | 6e-72 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | A0A068V2M1 | 0.0 | A0A068V2M1_COFCA; Uncharacterized protein | ||||
STRING | XP_006476705.1 | 3e-96 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1287 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 5e-69 | BIG PETAL P |
Publications ? help Back to Top | |||
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