PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g15810
Common NameGSCOC_T00042367001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family LBD
Protein Properties Length: 331aa    MW: 36938.8 Da    PI: 4.7494
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g15810genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.93.5e-38101101100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  aCaaCk++rrkC++dCvlapyfpa+q+k+f+n+h+lFG+s+++k+l++l   e++e+am+s+ ye+++r r Pv+G++g++++l++ql+ + +el+++
  Cc04_g15810  10 ACAACKYQRRKCSSDCVLAPYFPANQHKSFQNAHRLFGVSKIVKILEQLsTLEQQEEAMKSIKYESDMRERYPVHGCAGIVHHLREQLRLATEELHYV 107
                  7************************************************445669****************************************998 PP

       DUF260  98 kee 100
                   ++
  Cc04_g15810 108 YAQ 110
                  766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.8019111IPR004883Lateral organ boundaries, LOB
PfamPF031954.0E-3610106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MTVKGGTSPA CAACKYQRRK CSSDCVLAPY FPANQHKSFQ NAHRLFGVSK IVKILEQLST  60
LEQQEEAMKS IKYESDMRER YPVHGCAGIV HHLREQLRLA TEELHYVYAQ LAAHREQIPN  120
NQQQLGCSSS DYSSSHQPQL LHSGVMINNS CSTTQSIDAL PFFQHHSAGS MHDCEMPFTM  180
DYFLANENYG DDTDANDDEG VRHRDSNDHV AKPLLGLEPV YTNTPPDPNC DLIRNNVNSV  240
VGNQPEVIAN SNQAFGIQPE IKVFDQDYED MPPFNAMVDD RQSYVETKEA CESSSVESSF  300
RDFPQPAEQE SGMESELRTA AACFSLTSVN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-2321194127LOB family transfactor Ramosa2.1
5ly0_B3e-2321194127LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027122366.10.0LOB domain-containing protein 27-like
TrEMBLA0A068V3020.0A0A068V302_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-37LOB domain-containing protein 27