PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g15600
Common NameGSCOC_T00042333001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 332aa    MW: 37511.1 Da    PI: 4.6175
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g15600genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox628.8e-2096149356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k++++t++q+  Le+ Fe ++++  e+++eLAk+lgL+ rq+ vWFqNrRa++k
  Cc04_g15600  96 KKRRLTADQVLFLEKSFEDENKLEPERKAELAKELGLQPRQIAVWFQNRRARWK 149
                  56789************************************************9 PP
2HD-ZIP_I/II129.81.1e-4195186192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrl+++qv +LE+sFe e+kLeperK+ela+eLglqprq+avWFqnrRAR+ktkqlEkdye+L+++yd+lk++ ++L ke+e+L++e+ 
  Cc04_g15600  95 EKKRRLTADQVLFLEKSFEDENKLEPERKAELAKELGLQPRQIAVWFQNRRARWKTKQLEKDYETLQASYDKLKADYDNLLKEKEQLKAEVV 186
                  69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-2075153IPR009057Homeodomain-like
PROSITE profilePS5007117.89691151IPR001356Homeobox domain
SMARTSM003892.4E-2094155IPR001356Homeobox domain
PfamPF000465.2E-1796149IPR001356Homeobox domain
CDDcd000862.13E-1896152No hitNo description
Gene3DG3DSA:1.10.10.609.8E-2197158IPR009057Homeodomain-like
PRINTSPR000311.0E-6122131IPR000047Helix-turn-helix motif
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
PRINTSPR000311.0E-6131147IPR000047Helix-turn-helix motif
PfamPF021837.0E-16151192IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAGRTLVYGQ GGAGGTSNLS SFLLQNQRVG CSSSSQPHHD SLFISSSSPS FLGSRSMVSF  60
EDVNGRKRSN NSFYHSYDQE ERVDEELEEY FRQPEKKRRL TADQVLFLEK SFEDENKLEP  120
ERKAELAKEL GLQPRQIAVW FQNRRARWKT KQLEKDYETL QASYDKLKAD YDNLLKEKEQ  180
LKAEVVHITE KLLIKEKENE NSKLSHSSSL SAAPAKGSTA DSACEDEVSK VSAVALKQED  240
LSSAKSDVLD SDSPHYTDGV HSSLLEPGDS SYALEQDQSD LSQDEEDDIT KTLMHPAYLF  300
LKMEDSDYHD PQSSCYYGFP VEDQAFGFWS Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143151RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027125743.10.0homeobox-leucine zipper protein HAT5-like
RefseqXP_027167386.10.0homeobox-leucine zipper protein HAT5-like
TrEMBLA0A068V4R40.0A0A068V4R4_COFCA; Uncharacterized protein
STRINGEOY217131e-143(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-44homeobox 1