PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc04_g15400

Common Name

GSCOC_T00042310001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 525aa MW: 56643.7 Da PI: 7.2944

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc04_g15400	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.2	2.2e-30	171	230	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a +Cpv+k+v+r aed +++++tYeg+Hnh+ Cc04_g15400 171 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVApNCPVRKQVQRYAEDMSILTTTYEGTHNHP 230 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.9E-31	156	232	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-27	163	232	IPR003657	WRKY domain
PROSITE profile	PS50811	27.646	166	232	IPR003657	WRKY domain
SMART	SM00774	2.3E-35	171	231	IPR003657	WRKY domain
Pfam	PF03106	5.2E-27	172	230	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MGEVMEENQK LRMHLDRVMK EYRALQMQFH DMVQQEPNKS SSTISTHRET GEPELVSLSL 60 GMSSSDGKKD DHFSRKTHGK EKVDNDDDDK EVLALGLDCK FELPKYQENE PSPTPSLEAS 120 SGEVKEEEGG KTWPPKNSLK NVRNEEDEVS QQNSVKRARV SVRVRCDTPT MNDGCQWRKY 180 GQKTAKGNPC PRAYYRCTVA PNCPVRKQVQ RYAEDMSILT TTYEGTHNHP LPISATAMAS 240 TTSAAASMLI SGSTTSTSGL SPSVASILSS ASFNGLNFYL SDNTKPTPIY LPNSSLSSSS 300 SCPTITLDLT TSSNASSHPS KLGSFPPRSY STIQNLNFSS LESNALPLSW SNGVLGYGTQ 360 AQPYNKNQNI GSLNFGRQLQ EAHYQSYLQK NNSISNSSTQ QSLPADTLAA ATKAITSDPS 420 FQSALAAALT SIIGPGTSST ARVLGSQTAA DESGHNLKLI DQSFPILSSF PPSTSTVNKC 480 TSTFLSSSNP PSSANSQPGS LMFLSPSLSF PTPNNNSTSN VRLH*

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MGEVMEENQK LRMHLDRVMK EYRALQMQFH DMVQQEPNKS SSTISTHRET GEPELVSLSL  60
GMSSSDGKKD DHFSRKTHGK EKVDNDDDDK EVLALGLDCK FELPKYQENE PSPTPSLEAS  120
SGEVKEEEGG KTWPPKNSLK NVRNEEDEVS QQNSVKRARV SVRVRCDTPT MNDGCQWRKY  180
GQKTAKGNPC PRAYYRCTVA PNCPVRKQVQ RYAEDMSILT TTYEGTHNHP LPISATAMAS  240
TTSAAASMLI SGSTTSTSGL SPSVASILSS ASFNGLNFYL SDNTKPTPIY LPNSSLSSSS  300
SCPTITLDLT TSSNASSHPS KLGSFPPRSY STIQNLNFSS LESNALPLSW SNGVLGYGTQ  360
AQPYNKNQNI GSLNFGRQLQ EAHYQSYLQK NNSISNSSTQ QSLPADTLAA ATKAITSDPS  420
FQSALAAALT SIIGPGTSST ARVLGSQTAA DESGHNLKLI DQSFPILSSF PPSTSTVNKC  480
TSTFLSSSNP PSSANSQPGS LMFLSPSLSF PTPNNNSTSN VRLH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-20	158	232	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027121703.1	0.0	probable WRKY transcription factor 61 isoform X1
Swissprot	A0A3Q7GFB5	1e-147	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A068V4P5	0.0	A0A068V4P5_COFCA; Uncharacterized protein
STRING	XP_010256554.1	1e-161	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	2e-54	WRKY DNA-binding protein 61

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]