PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc04_g09840 | ||||||||
Common Name | GSCOC_T00042515001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 251aa MW: 28231 Da PI: 8.7261 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 151.5 | 3.9e-47 | 14 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrF+Ptdee+v +yL +k+ + +l++ ++i+e++++k++PwdLp + e++ yfFs+++ ky++g+r+nrat++gyWkatg dk+++s+ ++ Cc04_g09840 14 LPPGFRFQPTDEEIVFQYLLRKTFSCPLPA-SIIPEINVCKHDPWDLPGDL---EQDRYFFSNKEAKYPNGNRTNRATDTGYWKATGVDKQIVSSrRK 107 79****************************.89***************543...5689***********************************98455 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 l gl+ktLvf+kg++p+g++tdW+mheyrl Cc04_g09840 108 PLLGLRKTLVFHKGKSPHGSRTDWIMHEYRL 138 669**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.76E-55 | 11 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.509 | 14 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-24 | 15 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MGCLKFVKDG VIRLPPGFRF QPTDEEIVFQ YLLRKTFSCP LPASIIPEIN VCKHDPWDLP 60 GDLEQDRYFF SNKEAKYPNG NRTNRATDTG YWKATGVDKQ IVSSRRKPLL GLRKTLVFHK 120 GKSPHGSRTD WIMHEYRLIL TGKTACCSQQ TAKSSQSSSV QLGNWVLCHI FLKKGSTKAV 180 DETVQVCKNY KNIAEQNVRM DQHRFENFTI GNLSEVASTS SSSSFFSDPS VLTEVSSSQC 240 DYEETSSPIV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-47 | 12 | 174 | 13 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027121825.1 | 0.0 | NAC domain-containing protein 83-like | ||||
Swissprot | Q9FY93 | 5e-79 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A068V2V0 | 0.0 | A0A068V2V0_COFCA; Uncharacterized protein | ||||
STRING | XP_009597132.1 | 1e-100 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1387 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 3e-79 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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