PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g09420
Common NameGSCOC_T00022830001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 377aa    MW: 42162.6 Da    PI: 8.1399
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g09420genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.3e-09204251455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  Cc04_g09420 204 SHSLAERVRREKISERMKILQALVPGC----DKVTGKALMLDEIINYVQSLQ 251
                  8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-17198267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.31E-10198255No hitNo description
PROSITE profilePS5088815.542200250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16200267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6204251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MATFSYQRQQ QPLHLESSSG LFLQSSSQMR MSAGLLEEPN MTRMTTTTTS FPQFYQPDHF  60
LHQEIPSKSY VNESTCSIFD QSCTKVTHFS NNGPSLTNKT STDSSSVTDK LESGEQVTQK  120
VHAAAMDKKR KTKKGPLPVN SAQSKAIGDQ LAKGKKQRKC GRIMKEDEDK KSNEDKKVPE  180
KAAEEAPPTG YIHVRARRGQ ATDSHSLAER VRREKISERM KILQALVPGC DKVTGKALML  240
DEIINYVQSL QNQVEFLSMK LASLNPMFYD FGMDLDPYIA RPEPTLSNMA SPVQNMQQCD  300
PMQAPIISAT NNSLRTDTAN NYPQLDSSAS ALLIQESHHI PQILSQENGQ LLWDVDDRRQ  360
KLINQTGFNN NLCSFH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027123951.10.0transcription factor bHLH137 isoform X2
TrEMBLA0A068TQZ50.0A0A068TQZ5_COFCA; Uncharacterized protein
STRINGcassava4.1_023959m1e-116(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.28e-56bHLH family protein