PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g08830
Common NameGSCOC_T00022757001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 536aa    MW: 59899.5 Da    PI: 6.6409
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g08830genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.6e-16114158147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+eE++++++a k++G   W+ I +++g ++t+ q++s+ qk+
      Cc04_g08830 114 REKWTEEEHQRFLEALKLYGRA-WRQIEEHVG-TKTAIQIRSHAQKF 158
                      789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.34E-16108162IPR009057Homeodomain-like
PROSITE profilePS5129421.89109163IPR017930Myb domain
TIGRFAMsTIGR015577.7E-17112161IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.2E-9113154IPR009057Homeodomain-like
SMARTSM007179.9E-13113161IPR001005SANT/Myb domain
PfamPF002493.7E-13114157IPR001005SANT/Myb domain
CDDcd001671.35E-9116159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MLFEIHVCIN VEYTLKTINH IYIYIYIYIY IYIYLFHSEA MTFVGEIAKG YHWRHFIAYV  60
VCPNWDLIEG TSHDVSLGMR AHLETTAAQT QALTEMGNGY ALKVRKPYTI KKQREKWTEE  120
EHQRFLEALK LYGRAWRQIE EHVGTKTAIQ IRSHAQKFFA KVARDSNECE GSLNPIEIPP  180
PRPKKKPAHP YPRKVMDVTK TTLDDPHQPE QAPPFKRSGE ERNSRSPTSV LSALGSDTSG  240
SPSSEPQRSH LSPVSYTTDD AHSAIVQLTE NDNECMTSDS SVEEEKEYGH AILLATSATQ  300
DDESAMELDL LTFGRACPAE DPAFEQAPAT IKLFGRTVEI KENQKLSSSA PENSELSPSH  360
SMKEKLDIRN GRHMIGSAEN TIDSQVNLSL VPSCITPVAC LVPQYAVSED FGQLGSIPHM  420
IPMWTWSHGP LLPNLSLSNQ TAIENFGNNP YKGAVKNEES QREISLTGSN SGLVTAAKRG  480
QKIFNAIQSK NLGNVERQRS TKGFVPYKRC LAERDATSSL VAAEEREGQR ARICS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027122906.10.0protein REVEILLE 7-like isoform X1
TrEMBLA0A068TRG40.0A0A068TRG4_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74472127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.16e-39MYB_related family protein