PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g06330
Common NameGSCOC_T00022419001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WOX
Protein Properties Length: 362aa    MW: 40967.3 Da    PI: 6.4314
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g06330genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.93.1e-2269128357
                  --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  +R+++t+eql++Leel+++ +r+psaee+++++++l    +++ ++V++WFqN++a+e++
  Cc04_g06330  69 SRWNPTPEQLQTLEELYRRgTRTPSAEEIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 128
                  7*****************99**************************************97 PP
2Wus_type_Homeobox115.42.7e-3768130365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++eeiq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
        Cc04_g06330  68 SSRWNPTPEQLQTLEELYRRGTRTPSAEEIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 130
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003898.5E-666133IPR001356Homeobox domain
PfamPF000465.5E-2069128IPR001356Homeobox domain
SuperFamilySSF466898.55E-1369133IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-969128IPR009057Homeodomain-like
CDDcd000869.47E-770130No hitNo description
PROSITE profilePS5007111.3774129IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MWMMGYNDGG DSFGGRKLRS IVPRPAAVIN PSCLGRIHGT DLLSFNHHLA GLTEQSKRDF  60
GPQQVVVSSR WNPTPEQLQT LEELYRRGTR TPSAEEIQHI TAQLRRYGKI EGKNVFYWFQ  120
NHKARERQKR RRQLESTSDE QDHNNNDGNV ENTERKESAE ANGTGIEVER TKNWASSTNC  180
STLAEKTVSI QRTAKAAIPE RRAADGWVQF EEAELQQRKS LDERNATWQV MQFSCCSSSS  240
SPPTNNNLIN RTPCAATIPP TSLRNMDPKH IMNTREELNI FITPYTENFE THLVSASSNI  300
VVREANGHDG QSQTLQLFPL RSNDDGDDQE VAEKQSDESA AEMNSFTSTP YKFFEFLPLK  360
N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027125268.10.0WUSCHEL-related homeobox 1
RefseqXP_027168665.10.0WUSCHEL-related homeobox 1
TrEMBLA0A068TQP40.0A0A068TQP4_COFCA; Uncharacterized protein
STRINGEOY212981e-132(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46812342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.12e-61WUSCHEL related homeobox 1