PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g02680
Common NameGSCOC_T00021945001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GATA
Protein Properties Length: 375aa    MW: 40828.7 Da    PI: 6.5594
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g02680genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.31.9e-17258292135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  Cc04_g02680 258 CLHCGSEKTPQWRTGPMGPKTLCNACGVRYKSGRL 292
                  99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169929.9E-8222347IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.835252288IPR000679Zinc finger, GATA-type
SMARTSM004012.5E-17252302IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-14253289IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.47E-15254315No hitNo description
CDDcd002028.68E-14257304No hitNo description
PROSITE patternPS003440258283IPR000679Zinc finger, GATA-type
PfamPF003203.1E-15258292IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MEASSEFFVG GYFSHAGDNE FGHKSMENQN ITTGNSNNFT VDDLLDFPKE DEVMTDAFFD  60
SITGNSGESS SLTVVDSCNS SVSGGDRQFN GNISCRSFTD TQFSGSELCV PYDDLAELEW  120
LSNFVEESFS SDDLHNLHLI SPTTNFKAPS ASSAATANAT TDTSSSAATI STNNDNSNSS  180
SPVFPSDVSF PGKARSKRSR AAPCNWASRL LLLASPATSS SEPTNDVNTP NPISVTIKAP  240
KQAPSRKRET TETPGRQCLH CGSEKTPQWR TGPMGPKTLC NACGVRYKSG RLVPEYRPAA  300
SPTFVSAKHS NSHRKVLELR RQKELQRQQQ QQQQLLSQAS IFGVSNGGDE YLIRHHHHHH  360
PHQQNVGPDH RLMI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027126918.10.0GATA transcription factor 12-like
SwissprotP697811e-83GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A068TPL60.0A0A068TPL6_COFCA; GATA transcription factor
STRINGXP_009628152.11e-164(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-64GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]