PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g01670
Common NameGSCOC_T00021825001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 275aa    MW: 30426.8 Da    PI: 9.1391
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g01670genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-14555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+e l+ +vk++G+g Wk I +        ++R+  ++k++w++
      Cc04_g01670  5 KQKWTPEEEEALKAGVKKHGTGKWKNILKDPEfapflTNRSNIDLKDKWRN 55
                     79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.771162IPR017930Myb domain
SuperFamilySSF466893.23E-17258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-16456IPR009057Homeodomain-like
SMARTSM007178.6E-10459IPR001005SANT/Myb domain
PfamPF002491.0E-10555IPR001005SANT/Myb domain
CDDcd116602.28E-22655No hitNo description
SMARTSM005261.1E-15109174IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.41E-15111191IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.155111179IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.9E-14114185IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.4E-11115173IPR005818Linker histone H1/H5, domain H15
CDDcd000731.52E-11115190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGNPKQKWTP EEEEALKAGV KKHGTGKWKN ILKDPEFAPF LTNRSNIDLK DKWRNVSIST  60
GQISKVKSMA PRIKQSTAIA LPVTPISAVP ISVVEDDAVD DPSKSPQEGR NATLYDSMIF  120
EAITDIKDPN GSDIGAIVHF IEQQHEVPQN FRRLLSSNLR RLVLKGKLEK VQNCFKMKDA  180
ASGAKTPMPK KKDVCSRPSQ NFGSVTSIEK LEDAAINAAY RIAEAENKSF VAAEAVREYE  240
RAVNVAEDTD SALLLVKDIY DRCSQGQMVL LRCR*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027125104.10.0LOW QUALITY PROTEIN: telomere repeat-binding factor 4-like
RefseqXP_027168700.10.0LOW QUALITY PROTEIN: telomere repeat-binding factor 4-like
SwissprotF4I7L11e-70TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A068TNS60.0A0A068TNS6_COFCA; Uncharacterized protein
STRINGEOY271611e-106(Theobroma cacao)
STRINGXP_010242277.11e-106(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.13e-57MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]