PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc04_g01370 | ||||||||
Common Name | GSCOC_T00021786001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB_related | ||||||||
Protein Properties | Length: 239aa MW: 26155.6 Da PI: 4.7571 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.7 | 1.3e-08 | 4 | 27 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W++Ia +++ gRt++++k++w++ Cc04_g01370 4 RWSLIAGRLP-GRTDNEIKNYWNTN 27 5*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.84 | 1 | 32 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.16E-7 | 3 | 34 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.84E-7 | 4 | 28 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-11 | 4 | 28 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-6 | 4 | 28 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MSCRWSLIAG RLPGRTDNEI KNYWNTNLAK KYQSGERLAA SSSCTKRNPS STTLLHKLTS 60 SAHQPPNSEK REGSSTYVVR TKARRCTKVF FNADLQTPSA QQPGVLAVKS PVPSGADQAK 120 DDSNETRTTD NSEKVGPVPA SGGGTESPPT FSGEEGYSSG FMMDFEMDND FLSDFLNMEF 180 ERDFPEVVAQ GTDNNEANDF SFNCCPRALS HDDRNDHADL GSITDLLDTA VTWLHEVQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027125290.1 | 1e-171 | transcription factor MYB4-like isoform X1 | ||||
Refseq | XP_027125291.1 | 1e-171 | transcription factor MYB4-like isoform X1 | ||||
TrEMBL | A0A068TNQ3 | 1e-178 | A0A068TNQ3_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 3e-13 | MYB family protein |