PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g13070
Common NameGSCOC_T00030608001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 446aa    MW: 51157.2 Da    PI: 6.6517
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g13070genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.81.4e-23120216186
     trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                  +Wt+ +v++L++a+++++e+  ++           +kk++W++vsk+m+erg  +sp+qC++k+++lnkryk+++e+ +++ ++e++++ +++d ++
  Cc03_g13070 120 KWTDTMVRLLVTAVSYIGEEAAADYggarrkfanlQKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVVENPALLDMMD 216
                  7**************99999997634445667777**********************************************669***9999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.4E-22118242No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEGNLASGSM MPGNGSFGGL DLQGSMRIHH QQPNPFSLHQ HNQSHSRQGS MAHQTIHENF  60
PLTIGSMQEH DHTISLADFN KGDKAKCVSD EDEPSFTEDA ADGHNESSKG KKTFPWQRVK  120
WTDTMVRLLV TAVSYIGEEA AADYGGARRK FANLQKKGKW KSVSKVMAER GHFVSPQQCE  180
DKFNDLNKRY KRLNEILGRG TSCEVVENPA LLDMMDHVSE KAKEEVRKIL SSKHLHYEEM  240
CSYHNGNRLH LPHDPELQRS LRLALRSRED PDENNIRKHP ADDNEEDDQD AELDDREDYE  300
ESHALHAERM PYGISGSSSK RIKHGHGNED GCYGHSFSAL DCSRNLIFPS QSAPTDVNQV  360
MPQGMKANLL QKQWMSHRSL QLEEQKLQIQ AQMLELEKER FKWQKFSRKK DRELEIMKIE  420
NERMRLENER MALELKRKEM GIESN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1397409KERFKWQKFSRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027117411.10.0uncharacterized protein LOC113734862
TrEMBLA0A068UNC00.0A0A068UNC0_COFCA; Uncharacterized protein
STRINGXP_006434454.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76001830
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-137sequence-specific DNA binding transcription factors