PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g07870
Common NameGSCOC_T00033164001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 427aa    MW: 46898.1 Da    PI: 7.4342
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g07870genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.9e-19252300355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+g
  Cc03_g07870 252 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAFAYDTAAYMLRG 300
                  8******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.96E-30250310No hitNo description
Gene3DG3DSA:3.30.730.107.5E-31251309IPR001471AP2/ERF domain
PROSITE profilePS5103222.247251308IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-22251309IPR016177DNA-binding domain
SMARTSM003806.9E-34251314IPR001471AP2/ERF domain
PRINTSPR003671.5E-10252263IPR001471AP2/ERF domain
PfamPF008472.4E-12252300IPR001471AP2/ERF domain
PRINTSPR003671.5E-10274290IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MQKELPALFT VTPEGSRFLM DPNCISGGLN ESFCIDSGGG CNAKSSSASL DRLISSPESS  60
SSIEEASASN INSIKFSEFS EQKDMLKGYD AHSLLSGSAT FDYFSGSSSA QNTGSHIPLN  120
FLESFPAINE AQLREPCPSP PSKFPNLGLF LQEPSLMDVS RKATESLGKS QKREPMQLCS  180
QNPLFPISEM GKSQLLPWLK ISQSITNNSS KGFSDYWLST TKTTPMKFTG RRIQNGNQKT  240
SLSSISSPGK LFRGVRQRHW GKWVAEIRLP RNRTRVWLGT FDTAEEAAFA YDTAAYMLRG  300
DYAHMNFPDL KHQLKANSIS CSTAALLEAK LQAISQGLPA TKKSTELPIS QPKSVLHENS  360
RFKSLNIQVP AIKEWPLDLG CKIESGEMID IKKSQESLVD TEAVQLSRMP SLDMDTIWDA  420
LLVPDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-20247318168ATERF1
3gcc_A4e-20247318168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027165580.10.0ethylene-responsive transcription factor ERF062
TrEMBLA0A068URR20.0A0A068URR2_COFCA; Uncharacterized protein
STRINGcassava4.1_023072m1e-133(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA109211825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.12e-69ERF family protein