PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc03_g06560 | ||||||||
Common Name | GSCOC_T00026456001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 30316.1 Da PI: 9.9462 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62 | 1.2e-19 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++vk++G g+W+++ar g++R +k+c++rw +yl Cc03_g06560 17 KGPWTAEEDRLLIEYVKLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 64 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3e-16 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E++ ++++++++G++ W+tIar ++ gRt++++k++w+++ Cc03_g06560 70 RGQITPHEEKVILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.175 | 12 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.36E-31 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-17 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-18 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-24 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.58E-12 | 19 | 64 | No hit | No description |
SMART | SM00717 | 5.3E-14 | 69 | 117 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.08 | 69 | 119 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.4E-13 | 70 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-24 | 72 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.06E-9 | 74 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MAAEQLAWGV MEEGWRKGPW TAEEDRLLIE YVKLHGEGRW NSVARLAGLK RNGKSCRLRW 60 VNYLRPDLKR GQITPHEEKV ILELHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKAK 120 VSSDNSEKSK ARLLRRQQFQ QQQLLLQQQQ QQQQTQVFDM RRLMSLLEEN ENRVPTLPQM 180 KQDASAAATT IFPNTIDDHH QVFLYSVFNN SAALPEATNH DQDINWDGLW NMDEFSGNIY 240 YSNSANRATL RTSAATPYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-27 | 17 | 119 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP966100 | 1e-91 | KP966100.1 Lablab purpureus R2R3-MYB factor (MYB) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027165918.1 | 0.0 | transcription factor MYB48 | ||||
TrEMBL | A0A068TTG3 | 0.0 | A0A068TTG3_COFCA; Uncharacterized protein | ||||
STRING | POPTR_0008s17350.1 | 1e-112 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 1e-80 | myb domain protein 305 |