PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g00670
Common NameGSCOC_T00025653001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 339aa    MW: 37816.4 Da    PI: 6.9531
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g00670genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.8e-33177235159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK vk+s+fprsYYrCts++C vkk+vers+ dp++v++tYeg+H h+
  Cc03_g00670 177 LDDGYRWRKYGQKAVKNSPFPRSYYRCTSPSCGVKKRVERSSGDPTTVVTTYEGTHMHP 235
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-34162237IPR003657WRKY domain
SuperFamilySSF1182906.15E-29169237IPR003657WRKY domain
PROSITE profilePS5081131.777172237IPR003657WRKY domain
SMARTSM007742.1E-38177236IPR003657WRKY domain
PfamPF031067.0E-26178235IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEKDKRLEKN IKPENPMSNL TFSDQIPIPA TLAAIPNIYD IPIAAHPHDH DMVKMESFGF  60
IDMLTVPDYP CPSIYEMPQS PLPPPPPPSN HINNNNAPPE SSDVATTPAT PNSPSVSTSS  120
SDAQNDDQQQ NKTPVEGEQE DRDQDKTKKH LKPKKKNQKR QKEPRFAFMT KSEVDHLDDG  180
YRWRKYGQKA VKNSPFPRSY YRCTSPSCGV KKRVERSSGD PTTVVTTYEG THMHPTPLTS  240
RGSLGLVPES SASFICGPSG YHHQQPQQFQ QQQLQLLPFF RVPTAPASLH FNTPSSSFAH  300
MIVQESSYCP PPPSSFVDNG LLEDIVPSEM LIKEPKKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-271702371077Probable WRKY transcription factor 4
2lex_A2e-271702371077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6095907e-72JN609590.1 Gossypium hirsutum WRKY48 mRNA, complete cds.
GenBankJQ0812667e-72JQ081266.1 Gossypium hirsutum WRKY5 transcription factor (WRKY5) mRNA, complete cds.
GenBankKF6698557e-72KF669855.1 Gossypium hirsutum WRKY transcription factor 95 (WRKY95) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027115874.10.0WRKY transcription factor 23-like
SwissprotO229009e-52WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A068TTU00.0A0A068TTU0_COFCA; Uncharacterized protein
STRINGVIT_05s0077g00730.t011e-87(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.13e-42WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]