PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g39830 | ||||||||
Common Name | GSCOC_T00027660001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 420aa MW: 45312.6 Da PI: 4.9536 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.9 | 3.6e-13 | 234 | 279 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YIk+L Cc02_g39830 234 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVAYIKEL 279 799***********************6.....4****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 5.6E-28 | 69 | 167 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 2.62E-18 | 228 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.346 | 230 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.42E-15 | 233 | 280 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.5E-17 | 234 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-10 | 234 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.5E-17 | 236 | 285 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MDELIVSSPS SSSMVSSLPQ ESRPITTTAA SSSLQLNLQY ILQTQSDCWA YAIFWQSSND 60 QTDGQNDDGS VDCDVTDAEW FYVMSLAQSF FADDGAPGKA FSSGNLVWLT GGQQLQFYNC 120 QRAREAQIHG IETLVCIPTA GGVLELGSNA LIQDINWGLV QQAKSLFGPA ADMLEGAISF 180 ADFGLVSSFL ESSDSDCVVV VETTTRSHQV ERKGGVGGKK RGRKAGTGRE TPLNHVEAER 240 QRREKLNHRF YALRSVVPNV SRMDKASLLS DAVAYIKELK GKVDELESQL KRIEGNKKSV 300 KIEVADSNGN TTDNHSTTTA SSSSCSGGGG MSSNVQVEVK MVGTDAMVRV QSDSSGYPTA 360 RLMDAIRDLE LRVHHASMSH VNDLMLQDVV IRVPPNGAWA SEEGLKAALL GRFLGTDDR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-29 | 228 | 305 | 2 | 79 | Transcription factor MYC2 |
5gnj_B | 3e-29 | 228 | 305 | 2 | 79 | Transcription factor MYC2 |
5gnj_E | 3e-29 | 228 | 305 | 2 | 79 | Transcription factor MYC2 |
5gnj_F | 3e-29 | 228 | 305 | 2 | 79 | Transcription factor MYC2 |
5gnj_G | 3e-29 | 228 | 305 | 2 | 79 | Transcription factor MYC2 |
5gnj_I | 3e-29 | 228 | 305 | 2 | 79 | Transcription factor MYC2 |
5gnj_M | 3e-29 | 228 | 305 | 2 | 79 | Transcription factor MYC2 |
5gnj_N | 3e-29 | 228 | 305 | 2 | 79 | Transcription factor MYC2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028122222.1 | 1e-145 | transcription factor MYC2-like | ||||
TrEMBL | A0A068UJJ2 | 0.0 | A0A068UJJ2_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400014097 | 1e-139 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1072 | 21 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 5e-66 | bHLH family protein |