PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g39470
Common NameGSCOC_T00027710001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 607aa    MW: 66433.8 Da    PI: 6.837
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g39470genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12439485455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Cc02_g39470 439 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 485
                  799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.3E-5652240IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85435484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-18438497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-14438489No hitNo description
PfamPF000103.4E-10439485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-18439498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-16441490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MKFEVGMGGL IWNDEDKTVV AAVLGTKAFD YLFSSSLSAE GSLMAMGNDE NLQNKLSDLV  60
EHPNSSNFSW NYAIFWQISR SKSGDLVLGW GDGCCREPRE GEESEVTRIL NLRLEDETQQ  120
RMRKRVLQKL HTCFGGSDED SYAFGLDRVT DTEMFFLASM YFSFPRGEGG PGKSFGSGKH  180
LWVSDALKSS ADYCVRSFLA KSAGMQTLVL IPTDVGVVEL GSVRSIPESL ELVQSARSSF  240
SSFSSFIRAK QAAAVVMGAD KKDGNAPCPN LGIGERPDGI PKIFGQDLNP GNPQSREKLA  300
IRKPNEEHWD GYPNGNRIAF PSPRNGIHGA TWTTFGHVKP GNGAELYSPQ TQTSKLQGLV  360
NGSGDEFRLG SFQHQKPTQM QIDFTGATSR PVISRPLCVD SEHSDVEASC KEDVSVLGDE  420
KRPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRA VVPNISKMDK ASLLGDAIAY  480
ITELQKKLKD MESERDKFGS ASRDALTSEA SPSSDVQSLV PEIDIQGAHD KVIVKVSCPL  540
DTHPASRVIH GLKEAGVNVI ESKLAAGNDK VFHTFVVKPQ GSEQLTKDKL IAAISRSCES  600
TSLQAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-28433495264Transcription factor MYC2
5gnj_B3e-28433495264Transcription factor MYC2
5gnj_E3e-28433495264Transcription factor MYC2
5gnj_F3e-28433495264Transcription factor MYC2
5gnj_G3e-28433495264Transcription factor MYC2
5gnj_I3e-28433495264Transcription factor MYC2
5gnj_M3e-28433495264Transcription factor MYC2
5gnj_N3e-28433495264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1420428KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027160117.10.0transcription factor bHLH13 isoform X1
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A068UK620.0A0A068UK62_COFCA; Uncharacterized protein
STRINGXP_009781532.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]