PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g39120
Common NameGSCOC_T00027761001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 368aa    MW: 40795.3 Da    PI: 5.077
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g39120genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.11.8e-28133193158
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                  +dDg++WrKYGqK++ g++fpr+YYrCt++   gC ++k+v+rs+edp v+e+tY g+H +
  Cc02_g39120 133 VDDGHSWRKYGQKDILGANFPRAYYRCTHRnsrGCLATKQVQRSDEDPAVFEVTYIGRHSC 193
                  59***************************98899*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.504128192IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.8E-27129194IPR003657WRKY domain
SuperFamilySSF1182908.24E-25132193IPR003657WRKY domain
SMARTSM007745.5E-41133195IPR003657WRKY domain
PfamPF031061.3E-26134193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MEKVNPSDQK NLIIELSQGR EMANELRKQL DPVTSPATCE ALVEKIVSTY DKALAMLTWR  60
VLKEVETLPE TGRKESPPFH SPVLTTPITE GSNSSGFSKD QECNKDASRK RKTLPKWSDN  120
VRVCSASGLE GHVDDGHSWR KYGQKDILGA NFPRAYYRCT HRNSRGCLAT KQVQRSDEDP  180
AVFEVTYIGR HSCIQAANSG SAIRSDGKEM RKPKKARSLE REGGNQMGAE QTPQHLGQGL  240
KVETEVSKTK EEIFRSFSFS FKGVGSDILE SQFFSDVMKD CDMMGGSSPT FLSPTTSESN  300
YFSSSCQMDN NFGIDNILQT SESDLTDMIS TPTSVISSSP FGDHDFSIDQ VDFDTSFTLD  360
DDLAYFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-21132193768OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107112SRKRKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108522.10.0probable WRKY transcription factor 53
TrEMBLA0A068UKB50.0A0A068UKB5_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55532237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-42WRKY family protein