PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc02_g38600 | ||||||||
Common Name | GSCOC_T00027842001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 236aa MW: 26296 Da PI: 8.8036 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.4 | 2.6e-32 | 153 | 211 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s++prsYYrC++++C+vkk+v+r ++d+++v++tYeg Hnh+ Cc02_g38600 153 LDDGYRWRKYGQKSVKNSKYPRSYYRCSHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 211 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.1E-33 | 140 | 211 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-28 | 146 | 212 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.438 | 148 | 213 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.9E-38 | 153 | 212 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.3E-26 | 154 | 211 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MNLRSSPLLF MEGQDQETPP LPLPVPSPPT NPSFLFAQPH LPSPNSSLIF PNISHSQPLV 60 LQDNLHDLVG LFSAPPPTPS GIPNIAHDNT NDQIMMPSLE TAPLTISDNA VAPSPEEVAI 120 KDKIRRAASS SSKNRKNTVP KVVFQTRSPD DILDDGYRWR KYGQKSVKNS KYPRSYYRCS 180 HHTCNVKKQV QRLSKDTSIV VTTYEGIHNH PCEKLMETLS PLLEQIQFLT RPVLM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-25 | 141 | 210 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027102531.1 | 1e-172 | probable WRKY transcription factor 51 isoform X1 | ||||
Refseq | XP_027109730.1 | 1e-172 | probable WRKY transcription factor 51 isoform X1 | ||||
TrEMBL | A0A068UKL8 | 1e-171 | A0A068UKL8_COFCA; Uncharacterized protein | ||||
STRING | Aquca_013_00218.1 | 2e-62 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6374 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G64000.1 | 1e-54 | WRKY DNA-binding protein 56 |