PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g38550
Common NameGSCOC_T00027848001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 368aa    MW: 39985 Da    PI: 6.7057
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g38550genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.3e-30185243259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver+++dp + ++tY+geHnh+
  Cc02_g38550 185 SDMWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSDPGIYIVTYTGEHNHP 243
                  79************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.6E-31176245IPR003657WRKY domain
PROSITE profilePS5081133.947179245IPR003657WRKY domain
SuperFamilySSF1182907.98E-27183245IPR003657WRKY domain
SMARTSM007742.0E-37184244IPR003657WRKY domain
PfamPF031065.4E-26186243IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MADDWDLQAV VRGCTATTTT TSGSSATTAT CTGNSFRPLC GFEPHQDGNF LCFQDLFFEP  60
RSQSSISAVV DQDLHDLYKP FFPKSSPPLS PQSIPISPLS VLGGLQDLSQ QPPQQQQQQQ  120
QPKKQLQQQQ QQIYQPKHGS TLLPIGASSR SSGANGSSST SNHRSKRRKN QLKRVCQVPA  180
EASSSDMWSW RKYGQKPIKG SPYPRGYYRC STSKGCLARK QVERNRSDPG IYIVTYTGEH  240
NHPMPTHRNS LAGSTRNKPA TPQSTSSGDP SKPSSSPPVS PSASVSPAPE KLEVETSKEE  300
ILEDEEDDVS GFEMAMDDDF FEGLEEFAGK SAVTDNFSSD HFPQSMQQLP WLANNANSTT  360
GTAAGGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-21169246280Disease resistance protein RRS1
5w3x_D2e-21169246280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276186e-48KT827618.1 Manihot esculenta WRKY transcription factor 43 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108440.10.0WRKY transcription factor 22-like
RefseqXP_027115296.10.0WRKY transcription factor 22-like
TrEMBLA0A068UKM30.0A0A068UKM3_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000002151e-112(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-62WRKY family protein