PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g33420
Common NameGSCOC_T00015372001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HB-other
Protein Properties Length: 579aa    MW: 64821.6 Da    PI: 7.0671
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g33420genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.3e-1880135257
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                  +kR   t+ q+e+Le+l+ +++yp+++ +ee Ak++gLte+qV+ WF+ rR k+k+
  Cc02_g33420  80 KKRIVKTRAQVEALEKLYDEHKYPTEALKEEFAKSVGLTEKQVSGWFCHRRLKDKR 135
                  89****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-1966135IPR009057Homeodomain-like
SuperFamilySSF466892.74E-1668136IPR009057Homeodomain-like
PROSITE profilePS5007116.37476136IPR001356Homeobox domain
SMARTSM003893.4E-1778140IPR001356Homeobox domain
PfamPF000462.1E-1580135IPR001356Homeobox domain
CDDcd000864.71E-1580135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MPCLLRHSIF LAFLSGPCIL RLRNSCFACN DESVAERENG IKERAEGIEE ALFSKTPFEF  60
WLINMGEHSE DDKVLPEMNK KRIVKTRAQV EALEKLYDEH KYPTEALKEE FAKSVGLTEK  120
QVSGWFCHRR LKDKRLANPE AYANGRQDRS SGILQDRGSG LRQDSCGSTK QGDDRNYDPR  180
EVESRRLVGQ EYSAADLTYE LGSHYTGNHG SADDTSSGSS SSLRNMSFPQ DRDRFALANS  240
RYQAQSLPMD IKEVKPRTGP SGYLKVKGQV ENAAITAVKR QLGRHYWADG PPLGVEFDPL  300
PPGAFESSIQ EPPNESYYAE EAVLPRSPEN SMVHKNSNLG SGSQYNPKAS SHDSDMERTR  360
FKMAHGPDRS ENCFPPKYKQ KSPLHNHGDF YAGRSSSMDI HEGSARKTRV YDSQDPDRKA  420
KYGDGGMSLD SFSGHRHSRL HNPRVDSDHA DPWLQNYNEM NSNVAPAEHF VSKSSNLASK  480
GVEYDDFTHK GLSKRMAKKA KSSGERLTLN GNFDPVQPKN GLTSAKRVRN ELPQEHYCKK  540
TSWSEVPPWT NQASRSAAEM PTSFSEDDET ADTSSSVD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027107678.10.0homeobox-DDT domain protein RLT1-like isoform X2
TrEMBLA0A068V4R20.0A0A068V4R2_COFCA; Uncharacterized protein
STRINGXP_009630181.11e-150(Nicotiana tomentosiformis)
STRINGPGSC0003DMT4000802671e-150(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34362242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.16e-69HB-other family protein