PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g28210
Common NameGSCOC_T00025191001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 278aa    MW: 31636.3 Da    PI: 8.2121
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g28210genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-1296147154
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++++h  +ErrRR+++ + ++ L  llP  +   +++K s ++ L  Av++Ik++
  Cc02_g28210  96 KKANHRDIERRRRQEMAKLYASLGNLLPLeC---KKTKRSISDHLLDAVNHIKHM 147
                  689**************************88...********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-1286158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.92E-993152No hitNo description
PROSITE profilePS5088813.26895147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-1096147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1096160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-4101153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDDFTYNLIP LLQDDPMLFE YLPISTLHPD LEPAIPHQDL QNQVVASSLA ARQEKTEEII  60
IRNNINTARK RQTKASSAIR ADNHDRGKNP DESKQKKANH RDIERRRRQE MAKLYASLGN  120
LLPLECKKTK RSISDHLLDA VNHIKHMKKN IRELEVKRDK QINLTAGSSN LDVKIVEETN  180
SSAIKFTLRQ CSGGGIEILM KNYLADTKWF PLSKILDVLL DEGLAVVSCV CTKVNEEFLY  240
TIQTEVNADV DLICLQEKLT KNAMTGKDLK VLEQYRN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106882.10.0transcription factor bHLH118-like isoform X1
TrEMBLA0A068UH790.0A0A068UH79_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.13e-33bHLH family protein