PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g27960
Common NameGSCOC_T00025154001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 706aa    MW: 75732.3 Da    PI: 6.5579
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g27960genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-08282302526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++f++ G C++Gd C +aHg
  Cc02_g27960 282 PCPDFRK-GACRRGDACEYAHG 302
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002047.44E-137135No hitNo description
SMARTSM0024829001040IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.208.6E-1812182IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.06E-1615150IPR020683Ankyrin repeat-containing domain
PfamPF127968.9E-953126IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.06157150IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0585787IPR002110Ankyrin repeat
PRINTSPR014151.8E-55873IPR002110Ankyrin repeat
CDDcd002043.10E-692180No hitNo description
SMARTSM002483.8E-492124IPR002110Ankyrin repeat
PROSITE profilePS5008811.48792127IPR002110Ankyrin repeat
PRINTSPR014151.8E-5111125IPR002110Ankyrin repeat
SMARTSM003564.9E-6277303IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-6282302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695282304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4282304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4310340IPR000571Zinc finger, CCCH-type
SMARTSM0035643312335IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MNKLSVVTED CFSSLLELAA DNDVDGFKQM VERDPSAIDE VGLWLVRKKG TKQIVREERT  60
PLMVAAAYGS VDVLKLIVSL PEVDLNRACG PDKCTALHCA TAGGAVNAVD VVKVLLSAGA  120
DPNIEDANGQ RPVDVIVVPP KLATAKLALE ELLVNNPSDG SFGNCNLSIS VTTSNGSSPI  180
LSSSPENGSP CSPSELVSSP ITSKFIGAPA NSVSEKKEYP IDPSLPDIKN SIYATDEFRM  240
FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC VPCPDFRKGA CRRGDACEYA  300
HGVFECWLHP AQYRTRLCKD GTSCSRRVCF FAHTAEELRP LYVSTGSAVP SPRSAASAAG  360
VMDMAAALNL LPGSPSSHPV MSPSAFNQPM SPTANGMSHS SGAWTQPIVP ALHLPGSNLQ  420
SSRLRSSLSA RDIPPAEFNM LQDFDAQQLV LNDLACFSQS RPNSLSLNHS GRSKTLAPSN  480
LEELFSAEIN SSPRYADPAA GGGVFSPSHK SAVLNQFQQQ QSMLSPINTN VFSPKNVEHP  540
LLQASFGVSS PGRMSPRSVE PISPMSARLS AFAQREKHYQ QLRSLSSRDL GSKNVSVIGS  600
PVNSWTKFGG SPSGKVDWSV NGDEIGQMKR SSSFEANNNG EEPDLSWVQS LVKESSPEMK  660
DKLAAPLSGA APSGEGLKSS SQIDSIDHSV LGAWLEQMQL DQLVV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027160883.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A068UH580.0A0A068UH58_COFCA; Uncharacterized protein
STRINGXP_009799603.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]