PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g27790
Common NameGSCOC_T00025127001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 409aa    MW: 45579.5 Da    PI: 6.6191
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g27790genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.7e-083555526
                 --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                 +C f+++ G C yG+rC++ H+
  Cc02_g27790 35 ICTFYQK-GACAYGSRCRYEHV 55
                 7******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF156634.1E-8159No hitNo description
PROSITE profilePS5010314.464229IPR000571Zinc finger, CCCH-type
SMARTSM003560.001228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-7327IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-43056IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3053057IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-53354IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-43554IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.319145172IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012146171IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.5E-13204278No hitNo description
Gene3DG3DSA:3.30.40.104.7E-10207273IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.43E-4213273No hitNo description
PROSITE profilePS5008912.43214272IPR001841Zinc finger, RING-type
PfamPF000973.3E-7214271IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001841.1E-7214271IPR001841Zinc finger, RING-type
PROSITE patternPS005180238247IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.347301330IPR000571Zinc finger, CCCH-type
SMARTSM003560.064301329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MSKKRVQCKF FAHGACLKGD HCEFLHDWNA PQNNICTFYQ KGACAYGSRC RYEHVKVSRP  60
LSSASSSSSS SSANPSQYLQ SKSILAAHPS GAPSVVIGHA SGVTADSSLA SRSMLPTTKP  120
AGGEMVRHED VSEFSDFGET KSRNPADQPI CSFAAAGHCP RGEMCPHIHG DLCPTCEKHC  180
LHPFRPEERE DHVKLCERRQ KNLDALKHSQ EIECSVCLER VLSKPTAAEQ KFGILSECDH  240
PFCISCIRNW RSSSPASGMD VNSALRACPI CRKLSYFVIP SFIWYSSKEE KQEIVDSYKA  300
KLRSIDCKHF DFGNGTCPFG TSCFYKHTVK PGSYLWNSTL MPDLYCTRFM DSEEEECLSE  360
TVNKNALLYL FEHFYSPHIS AGVEEDFISE DSENEMAEEL AFMMMLGL*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027163676.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X1
SwissprotQ5ZA071e-144C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A068UHT20.0A0A068UHT2_COFCA; Uncharacterized protein
STRINGXP_010032408.11e-166(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-131C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]