PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g24700
Common NameGSCOC_T00028852001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 334aa    MW: 36589 Da    PI: 6.5818
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g24700genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0013426123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C++ F +   L  H+r+H
  Cc02_g24700  4 HRCKLCSRNFANGRALGGHMRSH 26
                 79********************9 PP
2zf-C2H212.90.00032179201123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+k F++   L  H  +H
  Cc02_g24700 179 YRCETCNKAFRSYQALGGHRASH 201
                  9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.088426IPR015880Zinc finger, C2H2-like
PfamPF139128.8E-7427IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SMARTSM003550.028179201IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.97179206IPR007087Zinc finger, C2H2
SuperFamilySSF576676.0E-9179201No hitNo description
PfamPF139126.1E-11179203IPR007087Zinc finger, C2H2
PROSITE patternPS000280181201IPR007087Zinc finger, C2H2
SuperFamilySSF576676.0E-9235262No hitNo description
SMARTSM003550.55240262IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141240262IPR007087Zinc finger, C2H2
PfamPF139123.0E-11240262IPR007087Zinc finger, C2H2
PROSITE patternPS000280242262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEKHRCKLCS RNFANGRALG GHMRSHMMNL CAASKAKQEF IKEEHEEEEV MNINDERQIS  60
EEFESVTAAA ADSVVVQDRE SETESSKNPI CRRSKRVRKS RVSDAVQFSG YINDRMAELK  120
KPKSGKQGRF SCELPFADAE PVSSISDTTT EEVVAYCLMM LSRDKWKKED NEEEAMGKYR  180
CETCNKAFRS YQALGGHRAS HKRIKAHNSN STEEEVAGVE TGNAASAAAV SSVVVEEKIH  240
ECPVCYRIFS SGQALGGHKR SHVMGAAAVA AAAAAAAATT HVSIRTSPAA KPFSRFGETF  300
IDLNLPAPVD DDEISQIELS AVSDAEFVNP FKQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106512.10.0zinc finger protein ZAT9-like
TrEMBLA0A068UPB50.0A0A068UPB5_COFCA; Uncharacterized protein
STRINGEMJ206571e-91(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-45C2H2-like zinc finger protein