PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g22960
Common NameGSCOC_T00014974001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TCP
Protein Properties Length: 539aa    MW: 56717.3 Da    PI: 7.3948
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g22960genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.66.1e-401432523118
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskk 99 
                  + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+ +  + s +ss+s         sa++sk+
  Cc02_g22960 143 PPKRSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANIStLNISVRSSGS-------TLSAPPSKS 233
                  6799****************************************************************88855555555555.......333335566 PP

          TCP 100 sqksaasalnlakesraka 118
                  +++s +sal+la++  ++ 
  Cc02_g22960 234 APHSFHSALALAHHPYEEG 252
                  6666666666666554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.6E-38147270IPR005333Transcription factor, TCP
PROSITE profilePS5136927.783148202IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MELTDLQQHQ TNKQTNANNT NTSSTTTTCT TSQSYHFSPF HLHHHHHQQQ HGRSAPFIAS  60
ISIPPPAALT SSVAGATSTT CAAAAGGNRT PSSASPSTPS TSASPSSAAV DASLAIATRS  120
ETLIDPSKKP PQQQQEAAQQ QQPPKRSTKD RHTKVDGRGR RIRMPAACAA RVFQLTRELG  180
HKSDGETIEW LLQQAEPAII ATTGTGTIPA NISTLNISVR SSGSTLSAPP SKSAPHSFHS  240
ALALAHHPYE EGFSHMLGFQ QQQQHLLAAN QMTEAIPSGD GGGDSGGGGG QDATESYLRK  300
RYREDLFKEE GSSGRQGDGA DETSPSPPNK QFKVGGGGGG MQIPKTQDVG GPSSGMLRHA  360
NMIPATAMWA VAPAPNSGGA TGSAFWMLPV TAGGSSQTIL AATSGGAVQQ QPTEQQHHHH  420
QMWPFPSSSG NTLQAPLHFM PRFNIPAGNL ETFQGGRASP LQLGSMLMQQ QQQQHPSQHL  480
GLGMSESNLG MLAALNAYSR GVGNLNMNSD HQNHPMDHQQ QHQPQPTDSG EDGPNSSQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027113207.10.0transcription factor TCP8-like
TrEMBLA0A068TNK80.0A0A068TNK8_COFCA; Uncharacterized protein
STRINGXP_009795828.11e-175(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114842125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.16e-47TCP family protein