PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g16520
Common NameGSCOC_T00014145001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 339aa    MW: 37431.5 Da    PI: 6.803
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g16520genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.2e-1157106154
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r++ +  rE+ RRdr+N+ f+eL   l ++     +K++Ka+iL+ A++ +k+L
  Cc02_g16520  57 RKVQKADREKLRRDRLNEQFAELGNTLDPD----RPKNDKASILTDAIQMVKEL 106
                  5677889********************997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.0E-1456129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.56756106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-857106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-757110No hitNo description
SuperFamilySSF474593.93E-1457126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-862112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDQFNHQETV YHHQQVQPPN PPLPEFGQPP PDMHLSSNRP NLDSRPEAVP KDSIATRKVQ  60
KADREKLRRD RLNEQFAELG NTLDPDRPKN DKASILTDAI QMVKELTAQI DKLKAEHAAL  120
NEESRELTQE KNDLREEKAS LKSDIESLNA QHQQRVRAMY PWAGMDHSVV MHPASYPFPL  180
PMPIPAGPIP MHPSLQPFPL YGNQNAAVVP SPVSTFVPYM APNSIIEQQS TQHVSQVTQP  240
GSRSHTSSRQ DSRPKACNQK DSRSEKSETS DDVATDLELK TPGSTVEQDV SPGQRKAKRS  300
SRKESNITEG SSSSRCSSSH SVQAASSSSV VGGTKTDE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027112077.10.0transcription factor bHLH121
SwissprotQ9LT232e-88BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A068TNL10.0A0A068TNL1_COFCA; Uncharacterized protein
STRINGSolyc01g111130.2.11e-141(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54562434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.16e-79bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]