PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g15780
Common NameGSCOC_T00014039001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HSF
Protein Properties Length: 372aa    MW: 42357.6 Da    PI: 4.5978
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g15780genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.98.9e-35131042102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+ ++ ++sws n++sf+v+++ ef++++Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +ll++i 
   Cc02_g15780  13 FLTKTYEMVDDPLTNAIVSWSCNNRSFIVWNPPEFSRDLLPQYFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANDDFVRGQPHLLKNIY 100
                   9********************999****************************************9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Cc02_g15780 101 RRKP 104
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.3E-38797IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.7E-619102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.22E-3410102IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.9E-3113102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-191336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-195163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDEPCSSNVL PPFLTKTYEM VDDPLTNAIV SWSCNNRSFI VWNPPEFSRD LLPQYFKHNN  60
FSSFIRQLNT YGFRKIDPEQ WEFANDDFVR GQPHLLKNIY RRKPVHSHSG QGAVESQLSE  120
SERRRYKDDI ERLKSDKEAL LFELQRYKQE EQRFELQVLG TTESVQLMEQ KQKNMMSFLS  180
KILQRPILAL ELMPEPHIHE RKRRIPGNSY LNEDISMANT QINSQILQKE QLDASSLLAF  240
NKDLLEELDS TLSFWENILI NVGQACDRLT SSPALVESTS CAGSPVVSYT EPNPKMSEID  300
MDCDQNTNTA VINDTANSDE LVAMNPTNVP TNGPTGVNDV FWEQFLTENP GSTNSSEVKV  360
NIMIMAGFGG T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-24710224129Heat shock factor protein 1
5d5v_B6e-24710224129Heat shock factor protein 1
5d5v_D6e-24710224129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027105613.10.0heat stress transcription factor A-4c-like
RefseqXP_027105614.10.0heat stress transcription factor A-4c-like
TrEMBLA0A068TLR40.0A0A068TLR4_COFCA; Uncharacterized protein
STRINGXP_009796383.11e-141(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.17e-95heat shock transcription factor A4A