PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g15550

Common Name

GSCOC_T00014009001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 292aa MW: 32729.1 Da PI: 5.302

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g15550	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.7	3.1e-30	77	135	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+ Cc02_g15550 77 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPNMLVVTYSCEHNHP 135 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.9E-31	74	137	IPR003657	WRKY domain
SuperFamily	SSF118290	9.94E-26	75	137	IPR003657	WRKY domain
SMART	SM00774	1.5E-35	76	136	IPR003657	WRKY domain
PROSITE profile	PS50811	32.282	77	137	IPR003657	WRKY domain
Pfam	PF03106	8.6E-26	78	135	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
METRFANSPL INEQEDSENS PENSGDSPRF CMLNDSKMTC TSSPKKSRRS IQKRVVSVPI 60 KDPEGSRLKG EMGVPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVERSRVD 120 PNMLVVTYSC EHNHPWPTPR NQNHHNQNQN SSPSINKATK TTSTKGESTN SANSDEEEGE 180 EEEKPAKFAS QAELNSDEKF VPLISSASDY GWFSEFESTT SCTMLESPIL TEARVTDADL 240 AMAFTMRDDD ESFFADLGEL PECSTVFHRG MMEREEERRR HGLTPWCGTT G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-22	53	138	6	80	Disease resistance protein RRS1
5w3x_D	1e-22	53	138	6	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027105581.1	0.0	probable WRKY transcription factor 65
Refseq	XP_027162668.1	0.0	probable WRKY transcription factor 65
Refseq	XP_027162695.1	0.0	probable WRKY transcription factor 65
Swissprot	Q9LP56	5e-70	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A068TKX2	0.0	A0A068TKX2_COFCA; Uncharacterized protein
STRING	XP_009758490.1	1e-127	(Nicotiana sylvestris)
STRING	XP_009595576.1	1e-127	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6475	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	3e-72	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]