PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g15010
Common NameGSCOC_T00013931001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 272aa    MW: 31106.6 Da    PI: 4.9083
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g15010genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.74.6e-1627118187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  +W+++ + +L++a  ++  +l+rg+l++++W+ev++++     + ++ +r+ +qCk++++ l+k+yk +k+  ++ + + +s++p+f +l+a
  Cc02_g15010  27 CWSEEATSTLVDAWGRRYLELNRGNLRQKDWQEVADAVnarhgHTKKTRRTDVQCKNRIDTLKKKYKIEKAKISESNGTLTSSWPFFARLDA 118
                  7*************************************99888888999*********************9999988888899******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.0E-2725119No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGEFSDLSPA PLLQTPPTRS LPFREDCWSE EATSTLVDAW GRRYLELNRG NLRQKDWQEV  60
ADAVNARHGH TKKTRRTDVQ CKNRIDTLKK KYKIEKAKIS ESNGTLTSSW PFFARLDALI  120
GNNSKNQQQK TSPMPVVLPQ KRQFSAVDDS YFRKNYSAVA AAAAAAAEEV EDDEEEDGGS  180
EEDEDEEVER EEGTVAGEEG VRRLAKAIER FGEIYERVEN MKQRQMVELE KQRMQFAKDL  240
EVQRMQLFMD TQVQLEKIKQ SKRSGSDDLY S*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027105528.11e-155trihelix transcription factor ASIL2-like
SwissprotQ9LJG84e-34ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A068TLE80.0A0A068TLE8_COFCA; Uncharacterized protein
STRINGXP_009757835.11e-118(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.22e-49sequence-specific DNA binding transcription factors