PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g13660
Common NameGSCOC_T00029118001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 746aa    MW: 81559.4 Da    PI: 4.6246
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g13660genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.3e-07252271525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                   C+ffa+ G+C  G++C+F H
  Cc02_g13660 252 VCDFFAK-GWCIKGNSCRFLH 271
                  7******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.58E-6247271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.864247274IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4247273IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-5252271IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MAAAAAAAAA KDPSSAETNS EALSDEDIEY EEIEEEIEVE EEIEVEEEEE EVEEEVEEEV  60
EEEVEEEVVG GGDVKGQVDD DIDKEFGEEL TPSNQVNDQN DTGQVIEPDC NEDHFIPGFA  120
TPGISVANLL PDTHVDQGCA GDYRISGSSV TTHNEEPHVD GKLFFMDHNN GASPCDKWGR  180
SGDSTRLPVH ELDAAISLID TESKKDNEDP YFEKGTYDIS GKDSKGEAPR IRPRSSSPES  240
VLNDGNKRQA VVCDFFAKGW CIKGNSCRFL HIKGGAAISS HDKEGTVDAA AKKSELPDKK  300
ASSVQLTPHG GESPNKRSET KELPLLKDDR LVLSSQDFGR PSSQDFGRQM NREEYLGYGS  360
SMAKGNSLHG TFSRSYARTL ETYGSTIGTP HSTSLEEMTC TRSNFLATDH SFSSLHRSPL  420
SFAYPSWNTD SLSTQKQLGS GQGDYASRSA SVQRSSSPFS GSESENVSQT NAVNDKQCSA  480
RSKTKTLYDW EPSVPFRPSF FMTRHLLSSA SLYDPIRDSV EQASSVVGHS KISQSGKEAS  540
VLGAHVQADA DSFPTGTLGT ECSSNKYSVL FSAKNFSSKD STAEAKESVG TQSQNKKSFL  600
KEERFLDNEC VRDVMEADQM PIDCGSKSVS SGRHRTESKE EMSRQMIEAD ADLKVEESRA  660
LKNFHASLVE VVKELLKPSW HKGVLSKDAH KIIVKKAVEK VLSTLQPHQV PSTSESVKQY  720
LSLSQTKLAK LVEGYVDKYR KSSLG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027105323.10.0protein FRIGIDA-ESSENTIAL 1 isoform X1
RefseqXP_027105324.10.0protein FRIGIDA-ESSENTIAL 1 isoform X1
RefseqXP_027105325.10.0protein FRIGIDA-ESSENTIAL 1 isoform X1
RefseqXP_027105327.10.0protein FRIGIDA-ESSENTIAL 1 isoform X1
RefseqXP_027105328.10.0protein FRIGIDA-ESSENTIAL 1 isoform X1
RefseqXP_027105329.10.0protein FRIGIDA-ESSENTIAL 1 isoform X1
TrEMBLA0A068TTC10.0A0A068TTC1_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30042122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.16e-39C3H family protein