PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g13590

Common Name

GSCOC_T00029128001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Dof

Protein Properties

Length: 332aa MW: 36105.3 Da PI: 8.3867

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g13590	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.1	4.7e-39	54	114	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Cc02_g13590 54 QQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 114 56789*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.0E-33	57	112	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-27	58	112	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	58	112	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	60	96	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MLGNCEKMVV ISSSTSNEWP LQPQNQMIDE KGLMDQSTAA KMMEKPSQDQ QQQQQPPLKC 60 PRCDSSNTKF CYYNNYSLSQ PRHFCKACKR YWTRGGTLRN VPVGGGCRKN KRVKRPASTN 120 EATSTSAQTA TSNPSHVVPP GQIDLSCSSA GNHINPLFYS LLTNNHHPSE LNFPYPARFN 180 TSNGYDLLQP QMNGLGLGFS SGPLASDVNG SDYRNGINSI SSNKQIQDVG VIPSNSLLSS 240 YSNSIFGSTS TSTTSTMASL IASTLQQQKM IFVVKDVKME EGQHRLDWSV ASNQNHIDQI 300 NSSDPSLLWN ATGVGAWLDP SNVGSSVPSL I*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027105310.1	0.0	dof zinc finger protein DOF1.4-like
TrEMBL	A0A068TVZ0	0.0	A0A068TVZ0_COFCA; Uncharacterized protein
STRING	VIT_10s0003g00040.t01	1e-118	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	1e-35	Dof family protein