PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g13310 | ||||||||
Common Name | GSCOC_T00029173001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | LSD | ||||||||
Protein Properties | Length: 257aa MW: 27550.6 Da PI: 4.3545 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 35.1 | 2.2e-11 | 167 | 191 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+YP+G ++V+C++C+tV Cc02_g13310 167 CGSCRLLLAYPPGVKYVQCSCCQTV 191 ************************9 PP | |||||||
2 | zf-LSD1 | 36.5 | 8.1e-12 | 205 | 229 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC +C V Cc02_g13310 205 CGGCAVLLMYPYGAPSVRCCSCRSV 229 **********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.4E-14 | 164 | 194 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.3E-9 | 167 | 191 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.7E-9 | 202 | 231 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.2E-9 | 205 | 229 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGTEEKDLVK GGGGGEEEDD DDDDDGPPPG FHCIATQIEE NLVKEEKDAE INENEDVDGP 60 PPGWSSIPPA TFQPVHPSDV EMSDKQKEDE NEEGPPPGWH SVPLASQSSE AVLADTQTGN 120 HEDRTKYIDE GSQPGQKSVP PLKLLPPTPP QPLPAVSSPS EKGQMVCGSC RLLLAYPPGV 180 KYVQCSCCQT VNLVLEDHQV GQVKCGGCAV LLMYPYGAPS VRCCSCRSVT EIGAHNRRPP 240 LSVQQARRPL SVNRVH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027111779.1 | 1e-147 | protein LOL2-like | ||||
TrEMBL | A0A068TTF7 | 0.0 | A0A068TTF7_COFCA; Uncharacterized protein | ||||
STRING | XP_009765270.1 | 2e-58 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11642 | 22 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 2e-36 | lsd one like 2 |