PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g13270 | ||||||||
Common Name | GSCOC_T00029178001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | HSF | ||||||||
Protein Properties | Length: 211aa MW: 24858.1 Da PI: 9.8146 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 102.7 | 3.3e-32 | 26 | 130 | 2 | 102 |
HHHHHHHHHCTG.............GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS HSF_DNA-bind 2 Flkklyeilede.............elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 Fl+k+y++le+e ++++sw+++g+ fvv+ + ef++ +Lp+yFkh+nf+SF+RQLn+YgFkk+ +++ weF+h++ Cc02_g13270 26 FLSKTYDLLEEEeergrreatergsWGQRVVSWTADGTGFVVWSPAEFSELMLPRYFKHNNFSSFIRQLNTYGFKKTASKR---------WEFQHEK 113 99********7777777888877767799************************************************9988.........******* PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 86 Fkkgkkellekikrkks 102 F+kg ++ll++i+rkk Cc02_g13270 114 FQKGCRHLLSEIHRKKC 130 **************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.0E-34 | 17 | 122 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.6E-42 | 22 | 128 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.54E-26 | 22 | 128 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.4E-29 | 26 | 128 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MARERRRPIV GQSSSSSSRI KSPAPFLSKT YDLLEEEEER GRREATERGS WGQRVVSWTA 60 DGTGFVVWSP AEFSELMLPR YFKHNNFSSF IRQLNTYGFK KTASKRWEFQ HEKFQKGCRH 120 LLSEIHRKKC EPSAFPQYLK ASEESNNSPS STVEENNTTR LLLMQENQNL KKERMELQMQ 180 IAHFKTLELK LMECLSFYWD DHHNKVRRLC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-15 | 10 | 128 | 16 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-15 | 10 | 128 | 16 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-15 | 10 | 128 | 16 | 129 | Heat shock factor protein 1 |
5d8k_B | 2e-15 | 23 | 128 | 3 | 105 | Heat shock factor protein 2 |
5d8l_B | 2e-15 | 23 | 128 | 3 | 105 | Heat shock factor protein 2 |
5d8l_D | 2e-15 | 23 | 128 | 3 | 105 | Heat shock factor protein 2 |
5d8l_F | 2e-15 | 23 | 128 | 3 | 105 | Heat shock factor protein 2 |
5d8l_H | 2e-15 | 23 | 128 | 3 | 105 | Heat shock factor protein 2 |
5hdk_A | 2e-15 | 23 | 128 | 8 | 110 | Heat shock factor protein 2 |
5hdk_B | 2e-15 | 23 | 128 | 8 | 110 | Heat shock factor protein 2 |
5hdk_C | 2e-15 | 23 | 128 | 8 | 110 | Heat shock factor protein 2 |
5hdk_D | 2e-15 | 23 | 128 | 8 | 110 | Heat shock factor protein 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027105264.1 | 1e-156 | heat stress transcription factor B-2a-like | ||||
TrEMBL | A0A068TTC0 | 1e-155 | A0A068TTC0_COFCA; Uncharacterized protein | ||||
STRING | EMJ13303 | 6e-90 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10707 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 4e-37 | heat shock transcription factor B2A |